Agentic Engine v2.0 is Live

Your Autonomous
Bioinformatics Copilot

Skip the boilerplate. Upload an .h5ad or let Dr. Helix fetch data directly from GEO to run Scanpy pipelines, pySCENIC regulons, and Squidpy communication entirely via chat.

Start Analyzing Data See How it Works

Built on the tools researchers trust

Scanpy DESeq2 pySCENIC Squidpy CellChat Harmony NCBI GEO PubMed
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β—Œ 99 credits οΌ‹ New U
What would you like to investigate?
πŸ”Filter skills β€” e.g. single cell, DESeq2, pathway…
Bulk RNA-seq
NEEDS DATA
Differential expression

Compare conditions and find significant genes (DESeq2).

Start β†’
NEEDS DATA
Quality control & PCA

Library sizes, clustering, outlier checks.

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NEEDS DATA
Pathway enrichment

Interpret a gene list with GSEA / ORA.

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Enterprise-Grade Analytical Power

Behind the chat interface runs a highly optimized Python backend utilizing the industry's most trusted computational biology libraries.

Scanpy Core

Full single-cell preprocessing, highly variable gene selection, PCA, UMAP embedding, and multi-level Leiden clustering natively supported.

Squidpy & OmniPath

Perform advanced cell-cell communication analysis. Discover significant ligand-receptor pairs between your annotated clusters instantly.

pySCENIC Regulons

Reconstruct gene regulatory networks and identify master transcription factors driving cell states using motif-supported AUCell scoring.

Bulk RNA-seq DGE

Standardized differential gene expression analysis for bulk data with automated volcano plots, MA plots, and PCA clustering.

GEO API Integration

Don't have local data? Simply ask the agent to fetch a public GSE accession number and it will download, parse, and analyze it autonomously.

Publication Ready

All generated figures (UMAPs, dotplots, heatmaps) are exported in high-resolution, accompanied by fully documented Markdown reports.

37+

Analysis tools

20+

Specialized workflows

2

Live data sources (GEO + PubMed)

100%

Cited, reproducible outputs

From question to result in three steps

No pipeline boilerplate. Dr. Helix plans, confirms, and executes β€” you stay in control.

1

Describe your goal

Ask in plain English, upload your dataset, or point to a public GEO accession. No scripting required.

2

Review the plan

Dr. Helix drafts a step-by-step analysis plan and waits for your approval β€” nothing runs until you confirm.

3

Get reproducible results

Approved pipelines execute with publication-ready figures, cited sources, and a full Markdown report.

Simple, Transparent Pricing

Start free. Upgrade to Pro when you're running full pipelines. Credits refill every month.

Free

Perfect for students and testing the waters.

$0/mo
  • βœ“ 20 analysis credits / month
  • βœ“ Bulk RNA-seq & single-cell
  • βœ“ Public GEO & PubMed search
  • βœ• Priority compute
Sign Up Free
Popular

Pro

For researchers executing full pipelines.

$15/mo
  • βœ“ 100 analysis credits / month
  • βœ“ pySCENIC, CellChat & Squidpy
  • βœ“ Multi-omics & specialized tools
  • βœ“ Publication-ready exports
Get Pro

Enterprise

For labs and teams with custom needs.

Custom
  • βœ“ Custom credit allocation
  • βœ“ Dedicated / priority compute
  • βœ“ SSO & team management
  • βœ“ Onboarding & support SLA
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Frequently asked questions

Do I need to know how to code?

No. You describe what you want in plain English. Dr. Helix selects the right tools, drafts a plan, and runs the pipeline for you.

What data can I analyze?

Upload your own matrices (CSV, TSV, H5AD) or fetch public datasets directly from NCBI GEO by accession. Literature comes from PubMed.

Which analyses are supported?

Bulk RNA-seq (DESeq2, QC, enrichment), single-cell (Scanpy, Harmony, pySCENIC, trajectory), cell–cell communication (CellPhoneDB, CellChat, Squidpy), plus deconvolution, splicing, metabolomics, and immune repertoire.

How do credits work?

Each plan includes a monthly credit allowance that refills every billing cycle. A credit is used when Dr. Helix runs real work β€” a search or an analysis step. Browsing and reviewing plans is free.

Can I cancel anytime?

Yes. Pro is a monthly subscription you can cancel whenever you like β€” you'll keep access until the end of the billing period, then move back to Free.

Ready to run your first analysis?

Start free with 20 credits a month β€” no card required. Move from biological question to reproducible result in minutes.

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